PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P25090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 413aa    MW: 45121.9 Da    PI: 8.0631
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P25090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.12e-4188164278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            C v+gC+adls ++eyhrrhkvCe+hsk+pvv+v g+eqrfCqqCsrfh l efDe krsCrrrL++hn+rrrk+q+
  GSMUA_Achr5P25090_001  88 CSVDGCKADLSGCREYHRRHKVCEAHSKTPVVMVGGREQRFCQQCSRFHLLVEFDEVKRSCRRRLEGHNRRRRKPQP 164
                            **************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-3480149IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.35185162IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.75E-3987167IPR004333Transcription factor, SBP-box
PfamPF031101.1E-3088161IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDWDSKIPLW DLADLGRDAD PSVGIGCGLG RRPSEVDCSV DLKLGGSGDF VPSHGWNDQP  60
KVPTMAASSG ASKRLPRNPG NGSQKASCSV DGCKADLSGC REYHRRHKVC EAHSKTPVVM  120
VGGREQRFCQ QCSRFHLLVE FDEVKRSCRR RLEGHNRRRR KPQPDSINSG SLFANHQGAT  180
FSSYPPIFPT ATPEPNWPGA VKTEDTALYA HCLPSHGTNR NHNVLSTHSW SQEGRQFPFL  240
QENKTTFSKI TLGIPVGQPH LRTFMPSGNS CSGGKIFSDG SSEPIDSDCA LSLLSAPTPS  300
INTGLGQMVQ IPAGHPHASS LHHCDDHAGI FLVSDANESE IHFPNVLHVG GEGSSVGTSQ  360
SLPFYWHLVK IFKDKTVYID PLLSGFQHIV CHLMLLLCTS QCFVRKRLPA TNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-27881611184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144161KRSCRRRLEGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402176.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
RefseqXP_018681795.10.0PREDICTED: squamosa promoter-binding-like protein 16 isoform X1
SwissprotQ0J0K17e-77SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLM0T1I40.0M0T1I4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P25090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-34SBP family protein