PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P26000_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 210aa    MW: 23049.6 Da    PI: 8.6595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P26000_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEde+l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  GSMUA_Achr5P26000_001 14 RGAWTKEEDERLIAYIKVYGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                           89******************************99************97 PP
2Myb_DNA-binding56.56.2e-1867110146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            rg++T++Edel+++++ +lG++ W++Ia++++ gRt++++k++w++
  GSMUA_Achr5P26000_001  67 RGNFTEDEDELIIKLHGLLGNK-WSLIASRLP-GRTDNEIKNYWNT 110
                            89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.314961IPR017930Myb domain
SMARTSM007177.6E-141363IPR001005SANT/Myb domain
SuperFamilySSF466894.67E-3013108IPR009057Homeodomain-like
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001674.26E-121661No hitNo description
PROSITE profilePS5129427.78562116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-2765116IPR009057Homeodomain-like
SMARTSM007179.4E-1766114IPR001005SANT/Myb domain
PfamPF002492.1E-1667110IPR001005SANT/Myb domain
CDDcd001672.69E-1369110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGRSPCCEKA HTNRGAWTKE EDERLIAYIK VYGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPGLKRGNF TEDEDELIIK LHGLLGNKWS LIASRLPGRT DNEIKNYWNT QIKRKLIGRG  120
VDPQAHGPAN GCAGLAINPS RPRGRCPDLN LDLSISPPCS EATEATPMSG PPCAPVICLC  180
CHLGLQASEA CSCQATPIRH SKLEANASLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30141167108B-MYB
1h8a_C7e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402646.11e-139PREDICTED: myb-related protein 308-like
SwissprotP813932e-91MYB08_ANTMA; Myb-related protein 308
TrEMBLM0T1S51e-152M0T1S5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P26000_0011e-152(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-84myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]