PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P26210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 279aa MW: 31768.3 Da PI: 9.3417

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P26210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.1	1.7e-06	97	116	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+ksF+r nL+ H+ GSMUA_Achr5P26210_001 97 FSCSVCTKSFNRYNNLQMHM 116 89*****************9 PP
2	zf-C2H2	13.2	0.00026	181	203	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k F + + ++H +++ GSMUA_Achr5P26210_001 181 FTCRKCRKAFAVRGDWRTHEKNC 203 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.46E-6	89	120	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-5	92	121	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.15	97	119	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.115	97	124	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	99	119	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	144	176	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.2E-5	166	201	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.9E-5	167	201	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	67	181	201	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDGFSSHPPR FFEWLKPPSS SPPPSPVRQK AVKEEDKASK DTVALRIGLS PAWGAVFVEE 60 EEEEKKKKKV EELCAVDSGS KYWIPTPDQI LTGPVQFSCS VCTKSFNRYN NLQMHMWGHG 120 SEYRKGPESL KGTQPMAMLK LPCYCCAHGC KNNINHPRAK PLKDFRTLQT HYKRKHGVKP 180 FTCRKCRKAF AVRGDWRTHE KNCGKLWSCT CGSDFKHKRS LNDHIRSFGK GHSHYLPSKI 240 PQGQQTCIIR FDNGDLMCNI ISEKDYEVGE FSSSQCHGT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009402618.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	3e-96	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	M0T1U6	0.0	M0T1U6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P26210_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP586	38	170

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	4e-98	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]