PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P26530_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 225aa    MW: 24463.2 Da    PI: 9.5861
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P26530_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.31e-231965147
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                           krien+  rqv fskRr+g++KKA ELSvLC+ae+a+++fs+ gk +
  GSMUA_Achr5P26530_001 19 KRIENEEARQVCFSKRRAGLFKKATELSVLCGAEIALVVFSPAGKPF 65
                           79*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.9641171IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-291181IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-361170IPR002100Transcription factor, MADS-box
CDDcd002652.59E-401280No hitNo description
PRINTSPR004043.3E-221333IPR002100Transcription factor, MADS-box
PfamPF003193.7E-272067IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-223348IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-224869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MIPPRKKKTS MGRQRIEIKR IENEEARQVC FSKRRAGLFK KATELSVLCG AEIALVVFSP  60
AGKPFSFGHP SVDSVVGRFL SGGAAPTPTP VVDHRMVPAR ASLVHELDRQ YLELGERLAA  120
ERARKDALEA ALRGRWGSTA GLLDANLEEI GLVELERLRE ALERLRWDVA MRVNQLVIEV  180
QTRSVVMAGD AAAGGFVGGF LAAAEEGVVA LPPQHGFSYG YGGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-181179169MEF2 CHIMERA
6byy_B2e-181179169MEF2 CHIMERA
6byy_C2e-181179169MEF2 CHIMERA
6byy_D2e-181179169MEF2 CHIMERA
6bz1_A2e-181179169MEF2 CHIMERA
6bz1_B2e-181179169MEF2 CHIMERA
6bz1_C2e-181179169MEF2 CHIMERA
6bz1_D2e-181179169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402798.21e-153PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLM0T1X81e-160M0T1X8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P26530_0011e-161(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-33AGAMOUS-like 62