PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P27280_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

SBP

Protein Properties

Length: 1065aa MW: 118386 Da PI: 7.1182

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P27280_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.3	5.2e-39	282	359	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+adl + ++yhrrhkvCe+h+ka++++v++ qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ GSMUA_Achr5P27280_001 282 TCQVEGCDADLCDSRDYHRRHKVCEMHAKASSAIVRNAIQRFCQQCSRFHLLEEFDEGKRSCRRRLAGHNRRRRKNHP 359 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-32	275	344	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.026	280	357	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.15E-36	281	361	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-28	283	356	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	8.39E-8	845	950	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.42E-8	849	950	No hit	No description
Gene3D	G3DSA:1.25.40.20	3.6E-6	849	952	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1065 aa Download sequence Send to blast
MDAAASLAAA RSTLEDLRSI DFSSPSEKYE EEPPGSEQLG HTKEGAASSR QAECAMEGQR 60 EQRTTGEAPP PSRRRSKQET QNEPGWYRRT QEVQRRQKTV RWRTLCRGQG SRAPQPSPPH 120 PAGRRSLFAP DGVVMAFATS RFTSANLGLL NCFEVFALME TRIGSKSHQF LAAGTSNVNV 180 IGQKGVEWDL NDWRWDGEHF VATPLDAVPA DCWSKHLRQD AAKGLVLNSP SSSSEGADCG 240 LVEKDNGESE KKRRIVVVEE DESCVKNEKK NKSQGGSSSN PTCQVEGCDA DLCDSRDYHR 300 RHKVCEMHAK ASSAIVRNAI QRFCQQCSRF HLLEEFDEGK RSCRRRLAGH NRRRRKNHPD 360 DNVNGSSSID ERASSYLLIS LLRILSNLQS NNSERSQDQE LLTHFLSNLG TLANSLDPSD 420 LSRLLRAAQD PPKLVTTAGT SSEAIITSVP NGVPEQDSRR PLGSAAKMTC TPGVQGPPQE 480 TDHVPSVADV PKIGRESSEE LVIDRVRMKD FDLNSDPRDC KKGEMPATSL CTGIGSPNVP 540 SWLLQNTCQL SPPQTSGNSD STSNHTQSRS HGDAQCRTDR IIFKLFGKNP HDLPLVLRAQ 600 ILDWLSNSPT DIESYIRPGC IILTIYLRQP EFAWAQLCND LSSYLARLLH NSHDFWTTGW 660 IFARVQNYAA FIYDGQVVLD MPLLVGHSNH CKILSVTPIA VSHSTNVNFT VKGFNIVQPT 720 SRLLCSFDGK YLFQETTQDL VEGFSRCAGH ESAQCLSFSC LLPDKTGRGF IELEDCGLTN 780 GFFPFIVADE DVCSEIRVLE KSINVGSCDD QLQERKDTDN ARNQALDFIN ELGWLLRRNH 840 MLALSVNLLH SAVQINSKAM VELLLRYKPS KPSKQMDPDQ FLFRPDMLGP SGLTPLHIAS 900 STSGAESILD ALTNDPGQLG INAWKNLRDS TGFTPKDYAL VRGHDSYLRL VQNKIDKQFH 960 LNQVVLNISG DASYKTVDVL KSVKADASDR TTWLSSKQPP SCNRCSQQLV YQNSVARTML 1020 YRPVMLSLVG IAAVCVCVGL LFKTPPEVFY VFPSFRWELL EYGFM

Sequence ? help Back to Top

Protein Sequence Length: 1065 aa Download sequence Send to blast

MDAAASLAAA RSTLEDLRSI DFSSPSEKYE EEPPGSEQLG HTKEGAASSR QAECAMEGQR  60
EQRTTGEAPP PSRRRSKQET QNEPGWYRRT QEVQRRQKTV RWRTLCRGQG SRAPQPSPPH  120
PAGRRSLFAP DGVVMAFATS RFTSANLGLL NCFEVFALME TRIGSKSHQF LAAGTSNVNV  180
IGQKGVEWDL NDWRWDGEHF VATPLDAVPA DCWSKHLRQD AAKGLVLNSP SSSSEGADCG  240
LVEKDNGESE KKRRIVVVEE DESCVKNEKK NKSQGGSSSN PTCQVEGCDA DLCDSRDYHR  300
RHKVCEMHAK ASSAIVRNAI QRFCQQCSRF HLLEEFDEGK RSCRRRLAGH NRRRRKNHPD  360
DNVNGSSSID ERASSYLLIS LLRILSNLQS NNSERSQDQE LLTHFLSNLG TLANSLDPSD  420
LSRLLRAAQD PPKLVTTAGT SSEAIITSVP NGVPEQDSRR PLGSAAKMTC TPGVQGPPQE  480
TDHVPSVADV PKIGRESSEE LVIDRVRMKD FDLNSDPRDC KKGEMPATSL CTGIGSPNVP  540
SWLLQNTCQL SPPQTSGNSD STSNHTQSRS HGDAQCRTDR IIFKLFGKNP HDLPLVLRAQ  600
ILDWLSNSPT DIESYIRPGC IILTIYLRQP EFAWAQLCND LSSYLARLLH NSHDFWTTGW  660
IFARVQNYAA FIYDGQVVLD MPLLVGHSNH CKILSVTPIA VSHSTNVNFT VKGFNIVQPT  720
SRLLCSFDGK YLFQETTQDL VEGFSRCAGH ESAQCLSFSC LLPDKTGRGF IELEDCGLTN  780
GFFPFIVADE DVCSEIRVLE KSINVGSCDD QLQERKDTDN ARNQALDFIN ELGWLLRRNH  840
MLALSVNLLH SAVQINSKAM VELLLRYKPS KPSKQMDPDQ FLFRPDMLGP SGLTPLHIAS  900
STSGAESILD ALTNDPGQLG INAWKNLRDS TGFTPKDYAL VRGHDSYLRL VQNKIDKQFH  960
LNQVVLNISG DASYKTVDVL KSVKADASDR TTWLSSKQPP SCNRCSQQLV YQNSVARTML  1020
YRPVMLSLVG IAAVCVCVGL LFKTPPEVFY VFPSFRWELL EYGFM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-29	276	356	4	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	97	RRRSKQETQNEPGWYRRTQEVQRRQK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009402494.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Refseq	XP_009402495.1	0.0	PREDICTED: squamosa promoter-binding-like protein 6
Swissprot	Q75LH6	0.0	SPL6_ORYSJ; Squamosa promoter-binding-like protein 6
TrEMBL	M0T253	0.0	M0T253_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P27280_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1998	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]