PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P27730_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WOX

Protein Properties

Length: 312aa MW: 33920.1 Da PI: 6.3961

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P27730_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.6	1.4e-15	23	83	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l ++ +++V++WFqNrR + ++ GSMUA_Achr5P27730_001 23 RTRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLeqfgSVGDANVFYWFQNRRSRSRR 83 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.1	1.1e-34	23	85	3	65
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 rtRWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q GSMUA_Achr5P27730_001 23 RTRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEQFGSVGDANVFYWFQNRRSRSRRRQ 85 79***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	11.143	19	84	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-13	20	92	IPR009057	Homeodomain-like
SMART	SM00389	5.7E-7	21	88	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.7E-8	23	88	IPR009057	Homeodomain-like
Pfam	PF00046	3.7E-13	23	83	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDDQNQDNYG GPNLQRSAME PLRTRWTPKP EQILILESIF NSGMVNPPKD ETVRIRKLLE 60 QFGSVGDANV FYWFQNRRSR SRRRQRQLQA SLMADPRAAG VVQHASGAAT SSSSNSPAGG 120 FFACSSSTSA AASSSNFVID DNADDLFSIS RQMGFMEATQ APPFMCSSDV SHLHNQPGQS 180 VHGFEIIDGL TPNQLTLIFF SSFISKLETV GGKEKGNRDL ALASTITVFI DGVASEVPKG 240 PIDLRAAFGH NVMLVHSSGQ LLPINDDGIL MQSLQMGESY FSVSNSDPLI SLSLSLLQSC 300 THNKRVSISQ LS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009402433.1	1e-134	PREDICTED: WUSCHEL-related homeobox 11-like
TrEMBL	M0T298	0.0	M0T298_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P27730_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1078	37	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	1e-32	WUSCHEL related homeobox 12