PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P27930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 580aa    MW: 64021.5 Da    PI: 7.517
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P27930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.6e-19346445198
                            EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                            f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++
  GSMUA_Achr5P27930_001 346 FEKVLSASDAGRIGRLVLPKACAEAYfpHISQPEGVPLTIQDTKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSR 432
                            99**************************777789999***************9989999999***9.********************8 PP

                            -SSSEE..EEEEE- CS
                     B3  85 dgrsefelvvkvfr 98 
                            ++   ++lv++ ++
  GSMUA_Achr5P27930_001 433 ID-PAGKLVMGYRK 445
                            87.77777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-29338448IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-20343445IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-23344445No hitNo description
SMARTSM010193.7E-20346446IPR003340B3 DNA binding domain
PfamPF023624.9E-16346444IPR003340B3 DNA binding domain
PROSITE profilePS5086311.307346447IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MATRRCMNAA CGVTEPGGEW RRGWGLRSGG FAMLCVKCGL AYEQLAFCDI FHQKESGWRE  60
CSSCGKRLHC GCIASKSSFD LLDIGGVQCI GCMKNPEAPF VRSEVVQNFL SQHHQAVFAL  120
STRCSKENDT DTAVVSRACE MSTTTADSKI DVGAFVKGKG MSNVDVEQSE SEIRSFGHIK  180
WEQQSPDIGI ASFSNRYQGP VVSSQISQLD EKDFVIDKSI SESLAQACLS MSLGNTNQGS  240
NMESCSSAER PLLALPMACS VAEGKDERKS LSFFQQLPRA RFLAKPPKTS NRAFSDASRS  300
ALPYMRVARP PAEGRNQLLP RYWPRITDQE LQQISGDSNS TIVPLFEKVL SASDAGRIGR  360
LVLPKACAEA YFPHISQPEG VPLTIQDTKG KEWHFQFRFW PNNNSRMYVL EGVTPCIQSL  420
QLQAGDTVTF SRIDPAGKLV MGYRKATNTV PLQQDSQISA IANGTFGNET LFSGVNENIS  480
TVSGYSGFLR WHKGGMPNEG LQLQPLQKRS RNIGTKSRRF LMDTEDALEL KLTWEEAQEL  540
LRPPPSAKPS IVTIEDHEVE EYEEPPVFGK KTIFTARSSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A6e-693244532131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018681987.10.0PREDICTED: B3 domain-containing protein Os07g0679700 isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLM0T2B70.0M0T2B7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P27930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-157HSI2-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]