PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P28350_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 237aa MW: 26859.2 Da PI: 8.1065

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P28350_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1e-14	10	57	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W ++Ed++lv+ v+++G ++W+ a+ g++R++k+c++rw +yl GSMUA_Achr5P28350_001 10 KGPWMEQEDLQLVRFVRLFGERRWDYLAKVSGLNRSGKSCRLRWVNYL 57 79********************************************97 PP
2	Myb_DNA-binding	55.1	1.8e-17	64	106	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 gr+T+eE+ l +++++++G++ W++Ia++++ gRt++++k++w++ GSMUA_Achr5P28350_001 64 GRMTPEEEHLVLELHAKWGNR-WSRIAQCLP-GRTDNEIKNYWRT 106 89*****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.811	5	57	IPR017930	Myb domain
SuperFamily	SSF46689	1.46E-27	9	104	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-11	9	59	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-13	10	57	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.6E-18	11	64	IPR009057	Homeodomain-like
CDD	cd00167	3.33E-8	12	57	No hit	No description
PROSITE profile	PS51294	24.882	58	112	IPR017930	Myb domain
SMART	SM00717	1.4E-14	62	110	IPR001005	SANT/Myb domain
Pfam	PF00249	7.5E-16	64	106	IPR001005	SANT/Myb domain
CDD	cd00167	6.16E-11	65	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-23	65	111	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MAAKNEETRK GPWMEQEDLQ LVRFVRLFGE RRWDYLAKVS GLNRSGKSCR LRWVNYLHPG 60 LRHGRMTPEE EHLVLELHAK WGNRWSRIAQ CLPGRTDNEI KNYWRTRMRK KAQERRMSTS 120 ASPSPSSSSS NISSSANEPP PDLVMKKRDG MESVAVGSSL TLGFGTNEGV MAYSMDQIWD 180 EIAATDRVSG LSTEEHKHGA RSVASPLWEH CSASPWKVDD EEFEMPTPAD GLVISSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-26	7	112	1	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-26	5	112	53	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-26	5	112	53	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	2e-26	10	112	4	105	C-Myb DNA-Binding Domain
1msf_C	2e-26	10	112	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009402364.1	1e-176	PREDICTED: myb-related protein MYBAS1-like isoform X2
Swissprot	Q53NK6	1e-74	MYBA1_ORYSJ; Myb-related protein MYBAS1
TrEMBL	M0T2F9	1e-175	M0T2F9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P28350_001	1e-176	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-67	myb domain protein 59

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]