PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P28380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NF-YB
Protein Properties Length: 139aa    MW: 15414.6 Da    PI: 6.5206
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P28380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB180.31.6e-5629121193
                  NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                            vreqdrflPian++rimkk+lPanaki+kdaket+qecvsefisfvtseasd+cq+ekrktingddllwa+atlGfe+y+eplk+yl+
  GSMUA_Achr5P28380_001  29 VREQDRFLPIANIIRIMKKALPANAKIAKDAKETMQECVSEFISFVTSEASDRCQKEKRKTINGDDLLWAMATLGFEEYIEPLKLYLQ 116
                            69************************************************************************************** PP

                  NF-YB  89 kyrel 93 
                            kyre+
  GSMUA_Achr5P28380_001 117 KYREV 121
                            ***98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.6E-5327121IPR009072Histone-fold
SuperFamilySSF471131.15E-3932122IPR009072Histone-fold
PfamPF008089.3E-293599IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.5E-236381No hitNo description
PROSITE patternPS0068506682IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.5E-2382100No hitNo description
PRINTSPR006157.5E-23101119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MAEAPPASPG GGGGSHESGE QSPRAGVGVR EQDRFLPIAN IIRIMKKALP ANAKIAKDAK  60
ETMQECVSEF ISFVTSEASD RCQKEKRKTI NGDDLLWAMA TLGFEEYIEP LKLYLQKYRE  120
VLCSFRGYVL PFNVFSDHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A8e-4825120297NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8622142e-64KJ862214.1 Triticum aestivum eukaryotic transcription factor NF-Y subunit B2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682020.12e-84PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
RefseqXP_018682021.12e-84PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
SwissprotQ8VYK45e-63NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLM0T2G21e-99M0T2G2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P28380_0011e-100(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-60nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]