PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P28660_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 277aa MW: 28686.2 Da PI: 10.4035

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P28660_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	4e-39	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e lkcprCdstntkfCy+nnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++ GSMUA_Achr5P28660_001 69 PEPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 129 56789*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-37	53	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	73	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.739	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MVFPSVPVYL DPPNWNQQLQ AHQQGSSSGG GASQLPPGMA APRPEGGMSA TIRPGSMVDR 60 ARLAKIPQPE PGLKCPRCDS TNTKFCYFNN YSLSQPRHFC KTCRRYWTRG GALRNVPVGG 120 GCRRNKRTKS AGGSASSGSG APLGGGIGME NLRLPQMQQF SSLGGLDLPQ PPAPAPTSGF 180 FPFVGEGGGF VGGSFTWQVQ TKPVGSGLIT QLASVKMEDS QQLFNFPRPH LGMSRNDPFW 240 SGSGSGGGGG GGGASSSGTG GWATDLSGFN SSSGSIL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009420090.1	3e-85	PREDICTED: dof zinc finger protein DOF5.1-like isoform X1
TrEMBL	M0T2J0	0.0	M0T2J0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P28660_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4893	29	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	4e-46	DNA binding with one finger 2.4