PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P29290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 430aa    MW: 47607 Da    PI: 7.3861
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P29290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-17123172155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  GSMUA_Achr5P29290_001 123 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 172
                            78*******************......55************************998 PP
2AP241.82.7e-13215265155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k++g
  GSMUA_Achr5P29290_001 215 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAHDKAAIKFNG 265
                            89********.7******5553..2.26**********99***********9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.9E-9123172IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-16123181IPR016177DNA-binding domain
SMARTSM003803.4E-32124186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-17124181IPR001471AP2/ERF domain
CDDcd000183.28E-11124182No hitNo description
PROSITE profilePS5103217.82124180IPR001471AP2/ERF domain
CDDcd000182.72E-24215275No hitNo description
PfamPF008478.4E-9215265IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-16215275IPR016177DNA-binding domain
SMARTSM003801.4E-29216279IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15216273IPR001471AP2/ERF domain
PROSITE profilePS5103215.804216273IPR001471AP2/ERF domain
PRINTSPR003676.8E-6217228IPR001471AP2/ERF domain
PRINTSPR003676.8E-6255275IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEFDLNVAYP GDSLAAAPYS FESSSNDIAT AAAGDEDARS SNGAASVFCS DVLGRPAEPV  60
VDEEEGCVSP EPGMATRQLF PLAAEVAAMQ PHVAPEANLV LQRRQQQRQQ VKKSRRGPRS  120
RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGLDADINFN  180
LSDYDEDLKQ LRNLTKEEFV HILRRQSTGF ARGSSKYRGV TLHKCGRWEA RMGQFLGKKY  240
IYLGLFDSEI EAARAHDKAA IKFNGREAIT NFEPSIYEGE ISLAPENEVA FEDVDLNLRI  300
SQPNLHYPKR DGNSGGTNFS CHSFEAMETG NSQAESLNYL NVGPRLAMAP QHPHSWASSC  360
PSFFFSIERN HPKAEVRPRQ PLPIPIRAWQ ISPTPLQSVS SAASSGFSTA TTMAAASQHP  420
SLPFSSIRNH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402241.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotQ8H4431e-128AP23_ORYSJ; APETALA2-like protein 3
TrEMBLM0T2Q30.0M0T2Q3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P29290_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.34e-96related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]