PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P29470_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family LBD
Protein Properties Length: 143aa    MW: 15915.3 Da    PI: 7.81
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P29470_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.13.1e-4361051100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +Ca+Ck+lrr+CakdC++apyfp e+p+kfa+vhk+FGasnv k+l++lp+ +r da+sslvyeA+ar rdPvyG+vg+i+ lq+q++
  GSMUA_Achr5P29470_001   6 PCASCKLLRRRCAKDCIFAPYFPPEDPHKFAIVHKVFGASNVNKMLQELPDYQRADAVSSLVYEANARKRDPVYGSVGIISYLQNQIS 93 
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            ql+ +la +++e
  GSMUA_Achr5P29470_001  94 QLQMQLAFAEAE 105
                            ******999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.9085106IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-426102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MAGGSPCASC KLLRRRCAKD CIFAPYFPPE DPHKFAIVHK VFGASNVNKM LQELPDYQRA  60
DAVSSLVYEA NARKRDPVYG SVGIISYLQN QISQLQMQLA FAEAELLCIR MQQERSLANQ  120
HVIDIHEPSS LFCATASPAF LNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4621077112LOB family transfactor Ramosa2.1
5ly0_B1e-4621077112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027063413.13e-71LOB domain-containing protein 12-like
RefseqXP_027109200.13e-71LOB domain-containing protein 12
SwissprotQ8LBW38e-69LBD12_ARATH; LOB domain-containing protein 12
TrEMBLM0T2S11e-102M0T2S1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P29470_0011e-102(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88238150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-71LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]