PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P00050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27946.9 Da    PI: 9.9778
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P00050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.3e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs +gklyeys+
  GSMUA_Achr6P00050_001  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSAKGKLYEYST 59
                           79***********************************************96 PP
2K-box108.29.2e-36871731399
                  K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             + +++qe++kLk+++e L r+qRhl+Ge+LesL+++eLqqLe+qLe slk++Rs+Kn++++++i elq kek+lqe+n++L+k++ 
  GSMUA_Achr6P00050_001  87 SQGNWCQEYRKLKAKLEALSRSQRHLMGEQLESLNIRELQQLEHQLEISLKHVRSRKNQVMFDSIAELQSKEKALQEQNMNLEKQIV 173
                            4689********************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.856161IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-40160IPR002100Transcription factor, MADS-box
CDDcd002651.19E-41273No hitNo description
SuperFamilySSF554552.62E-33287IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-31323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-3086172IPR002487Transcription factor, K-box
PROSITE profilePS5129717.18988178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFSA KGKLYEYSTD  60
SSMEKILGRY ENYWYAEKAF ISSDLDSQGN WCQEYRKLKA KLEALSRSQR HLMGEQLESL  120
NIRELQQLEH QLEISLKHVR SRKNQVMFDS IAELQSKEKA LQEQNMNLEK QIVEKQKAKV  180
VNQQVHWDHA QRSSASPPSL MAEADPTFNI GPYQGMAAVY GQHQVRTSNG LLPPWMFRPL  240
NG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-22185184MEF2C
5f28_B1e-22185184MEF2C
5f28_C1e-22185184MEF2C
5f28_D1e-22185184MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682525.10.0PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S72e-96AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLM0T2V31e-180M0T2V3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P00050_0011e-180(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115137113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.14e-87AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]