PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P00120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SAP
Protein Properties Length: 105aa    MW: 11541 Da    PI: 6.5021
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P00120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP85.47.6e-272104359454
                    SAP 359 vvdsrGvatvrrvenleevcrfr.vrg......aqrgvlgCvnggyalvyag.gvlrvWeiekkegylyslrervgevnalvaddrhv 438
                            +vd+rG a+v  v  l+e+crf+ vr+         gv gC+n gya+v+++ g +rvW+  ++e ylys+rer+ge+ a va dr+v
  GSMUA_Achr6P00120_001   2 AVDTRGLAKVWEVPRLQEICRFStVRRaegrqqGAAGVQGCMNWGYAVVCSAhGGVRVWDATTSE-YLYSFRERIGEAAASVAGDRYV 88 
                            79********************73554444322234799***********86369*****99976.********************** PP

                    SAP 439 avsssdgtihlldfga 454
                            a+ ++++ +hl+dfga
  GSMUA_Achr6P00120_001  89 AAWADETGLHLWDFGA 104
                            ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.130.10.102.3E-67102IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509785.31E-58101IPR017986WD40-repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MAVDTRGLAK VWEVPRLQEI CRFSTVRRAE GRQQGAAGVQ GCMNWGYAVV CSAHGGVRVW  60
DATTSEYLYS FRERIGEAAA SVAGDRYVAA WADETGLHLW DFGAL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403100.13e-68PREDICTED: transcriptional regulator STERILE APETALA-like isoform X1
RefseqXP_018683050.11e-68PREDICTED: transcriptional regulator STERILE APETALA-like isoform X2
TrEMBLM0T2W04e-70M0T2W0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P00120_0017e-71(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1848179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-18SAP family protein