PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P00250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 239aa    MW: 25326.8 Da    PI: 10.578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P00250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.84.3e-211969155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  GSMUA_Achr6P00250_001 19 THYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAARQFRG 69
                           68********.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-141969IPR001471AP2/ERF domain
CDDcd000188.02E-191978No hitNo description
SMARTSM003804.2E-382083IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-232078IPR016177DNA-binding domain
PROSITE profilePS5103224.252077IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-332078IPR001471AP2/ERF domain
PRINTSPR003671.5E-112132IPR001471AP2/ERF domain
PRINTSPR003671.5E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAGGGGRAGG GGRAGGKETH YRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAARAY  60
DAAARQFRGS KAKTNFPHPE AYTRPGPAGV VAIATPAAGG GSPSSQSSTV ESSSREVPPL  120
AIPLPPSLDF DLLRRRVARF PFQPYPAVAA PAMPASRPCC LFDTIVGSEK ASAAVSMNRR  180
RFCPPMIIAD MHAPTASGVL SDSDSSSVAD VRLNHRFRGP HKMLTLDLDL NLPPPPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-221179474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1411GGRAGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402849.11e-172PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLM0T2X31e-171M0T2X3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P00250_0011e-172(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-27erf domain protein 9