PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P01020_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 261aa    MW: 28978.9 Da    PI: 8.2168
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P01020_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-097294326
                           S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                            + C++f++ G Ck+Gd C FaHg
  GSMUA_Achr6P01020_001 72 SAACPDFRK-GGCKRGDACEFAHG 94
                           678******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.3E-66896IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.4E-56898IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-66995IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7517096IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-77194IPR000571Zinc finger, CCCH-type
SMARTSM0035620104127IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MMMMGAEGGD RRHPTVVPDS AVDVYSSDEF RMYEFKVRRC ARGRSHDWTE CPFVHPGEKA  60
RRRDPRKYHY SSAACPDFRK GGCKRGDACE FAHGVFECWL HPARYRTQPC KDGTTCARRV  120
CFFAHAPDQL RVLSQHQQTT TLPATSTLMS PPVSPPMSPS RTALRRASWP VGTSLNEIVA  180
ALRQLQLTQA NPAPSCWNLQ LGDGLGWADD ADGGLAEGEE PVERVESGRA LRAKIFEKLS  240
KECVVERAEA APPVPAPEVV K
Functional Description ? help Back to Top
Source Description
UniProtInvolved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269|PubMed:16778011}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961411e-100FP096141.1 Phyllostachys edulis cDNA clone: bphyem209h03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402941.11e-146PREDICTED: zinc finger CCCH domain-containing protein 35-like
SwissprotQ9FU273e-87C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLM0T3500.0M0T350_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P01020_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.14e-74C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Mebel AM,Kislov VV,Hayashi M
    Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories.
    J Chem Phys, 2007. 126(20): p. 204310
    [PMID:17552765]
  3. Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T
    Anti-angiogenic function of tocotrienol.
    Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6
    [PMID:18296349]