PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P01160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 490aa    MW: 54411.8 Da    PI: 4.7145
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P01160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12290334554
                            HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + Er+RR+++N+++  Lr l+P++     +K + a+i+  A+e+Ik+L
  GSMUA_Achr6P01160_001 290 SFATERQRREQLNEKYKALRLLIPNP-----TKADRASIVGDAIEHIKEL 334
                            5789**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014471.23E-5209219No hitNo description
PROSITE profilePS5088814.627285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9290334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-13291347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11292346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.53E-11294339No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MLDENGYYDP NHGSNPIQAS LVDSPNQSVT YNDHSNGLDD GNIKLPTFSL EDLSHHDNLP  60
SEDAAPEIGL DHLQHPIIFD LDQELQSNII EEGPPPPVES NRWEPSMEHI QESFTMNHHH  120
IIYEDQQQGV AEEDLQNYAI PYPDPPYAVA PDLFNILQLP ACTVAPTMFP PTASISFGNP  180
SLQPASFSFD VYNNDVPASH DSTQQMGYPP PPPPPPPPPP QSRLLKDLFS SLPQNYGLFC  240
GVDEREAMVG GAIGGGNVFQ EMDLRRYDGI GLDYDRREMG GLGKGEGKTS FATERQRREQ  300
LNEKYKALRL LIPNPTKADR ASIVGDAIEH IKELLRTVEE LKVLVEKKRH GRERRKILKM  360
EDEATADMES SSIRPLSVER DDPLSGGLRS SLLQRRYKDG AVDVRIIDDE VNIKLTQKKK  420
PNCLLDAAKA LDELHLDLAH VAGGNVGDHH VYMFNTKISE GSSVYAGAVA NKFLRVLEGQ  480
HGNQPCPVAF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402958.10.0PREDICTED: transcription factor EAT1-like isoform X1
TrEMBLM0T3640.0M0T364_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P01160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19043796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31220.13e-52bHLH family protein