PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P01410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 281aa    MW: 31400.9 Da    PI: 8.1038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P01410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.00064101117117
                            EEETTTTEEESSHHHHH CS
                zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                            ++C+ C+k+F+r  n++
  GSMUA_Achr6P01410_001 101 FSCTVCNKTFNRYNNMQ 117
                            89*********988875 PP
2zf-C2H213.60.0002190212123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            y C  Cgk F  + + ++H +++
  GSMUA_Achr6P01410_001 190 YACRRCGKAFAVRGDWRTHEKNC 212
                            89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.6E-4101118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.5E-6173210No hitNo description
Gene3DG3DSA:3.30.160.605.4E-6176210IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974190210IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MFSKGGTSLS SKTNDEEEDR SVLLLSLWPP GCQGTPSSCS SPASSSCSSS TSTSVASSRL  60
HTSFIQQQQH GVATTAAGFN PVPRQYWIPS PAEILIGTTQ FSCTVCNKTF NRYNNMQQMH  120
MWGHGSQYRR GSESLRGVTR QVPSPSLLKL PCYCCAEGCK NNIEHPRSRP LKDFRTLQTH  180
YKRKHGARPY ACRRCGKAFA VRGDWRTHEK NCGKLWFCIC GSDFKHKRSL KDHVRSFGSG  240
HAPHLVETMS VDEEEEDEVE EDGEDGDEEG NGDSVHRNRL H
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403121.11e-160PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX682e-96ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLM0T3890.0M0T389_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P01410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113063241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.14e-96C2H2-like zinc finger protein