PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P01440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 186aa    MW: 20321.2 Da    PI: 10.2962
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P01440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-193079255
                    AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           +++GVr ++ +gr++AeIrd ++    ++r +lg+f+taeeAa a++aa++ l+g
  GSMUA_Achr6P01440_001 30 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLGTFDTAEEAALAYDAAARTLRG 79
                           69*******.**********883....5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-152989No hitNo description
PROSITE profilePS5103221.8523087IPR001471AP2/ERF domain
PfamPF008479.0E-133079IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-213089IPR016177DNA-binding domain
SMARTSM003802.6E-343093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-293087IPR001471AP2/ERF domain
PRINTSPR003675.6E-103142IPR001471AP2/ERF domain
PRINTSPR003675.6E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MMAVETLRLR KEGLGPPAAA AVAGGEKEAH FRGVRKRPWG RFAAEIRDPW KKTRKWLGTF  60
DTAEEAALAY DAAARTLRGS KAKTNFGYSA ADVEIVPAAV PEPQIGWLSS SPWRSGFREP  120
ATALNGRDLF LGQPGLAVES GSEFSGYRFE AVKMVVKGEQ ERRGTVAEGK KKPPFCFDLN  180
LPPPFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-202786262ATERF1
3gcc_A3e-202786262ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009402998.11e-132PREDICTED: ethylene-responsive transcription factor 3-like
TrEMBLM0T3921e-130M0T392_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P01440_0011e-131(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.18e-18erf domain protein 9