PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P01990_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 248aa    MW: 27111.4 Da    PI: 6.5873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P01990_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00027100122123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C++C + F ++  L  H++ H
  GSMUA_Achr6P01990_001 100 FSCNYCRRKFYSSQALGGHQNAH 122
                            89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-697127No hitNo description
PROSITE profilePS5015711.385100127IPR007087Zinc finger, C2H2
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MAALGFAVDA TLSRTSSAHS DTRVAKDEPV MALEEEEQRQ EGIGEQPEFN GKLLDLSLSN  60
SDTEKTTSPG TPVLVLNLIE SLGSVEPPNP ESSESEPRVF SCNYCRRKFY SSQALGGHQN  120
AHKRERSLAK NGGRGGARLG DQFSHRLPPS MAALPLHALY GGRHLGVQVH SMIHKPYYGT  180
SSGIVLHEQH RPTMIFDQQH GVGTRTSVLV ERFDEPGVMT GDIRWVDAGD GGVVSRKEVQ  240
MLDLTLRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403135.10.0PREDICTED: zinc finger protein 1-like
TrEMBLM0T3E70.0M0T3E7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P01990_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.12e-26C2H2 family protein