PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P02170_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

ZF-HD

Protein Properties

Length: 231aa MW: 25226.3 Da PI: 8.5032

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P02170_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.1	1.5e-31	49	101	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +Y+eClkNhA+ +GghavDGCgEfm++ geegt +al+CaACgCHRnFHRre+e GSMUA_Achr6P02170_001 49 KYRECLKNHAVGIGGHAVDGCGEFMTA-GEEGTLDALRCAACGCHRNFHRREEE 101 8***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	4.2E-29	49	100	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.7E-30	49	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	28.068	50	99	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-19	52	98	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.05E-17	162	229	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.8E-29	165	231	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.2E-23	168	224	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDFDEHDEGI EEMALPVGSR GESASATAGM AMRGSGHRKT YGGRGGRGKY RECLKNHAVG 60 IGGHAVDGCG EFMTAGEEGT LDALRCAACG CHRNFHRREE EGGGAGGGAT EVIGYHPQFS 120 PYNRAPGGYF HPHHSTAAAL ARDEQEETPI PMVGVGGGVG RRGGVVARKR FRTKFTQEQK 180 EKMLAFAEWL GWRIQRHDEA AVQKFCEETC VKRHALKVWM HNNKHTLGKK H

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-25	169	226	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403138.1	1e-125	PREDICTED: zinc-finger homeodomain protein 2-like
Swissprot	Q6YXH5	1e-75	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	M0T3G5	1e-168	M0T3G5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P02170_001	1e-169	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	7e-60	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]