PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02310_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 198aa    MW: 21899.7 Da    PI: 4.674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02310_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643.2e-2082131255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+W+AeIrdp+    r  r +lg+f+tae Aa+a++aa+ +++g
  GSMUA_Achr6P02310_001  82 RYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEAAARAYDAAAIEFRG 131
                            7********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.2E-3882145IPR001471AP2/ERF domain
PROSITE profilePS5103225.63382139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-3282139IPR001471AP2/ERF domain
CDDcd000189.35E-2182141No hitNo description
PfamPF008478.5E-1482131IPR001471AP2/ERF domain
SuperFamilySSF541715.62E-2382140IPR016177DNA-binding domain
PRINTSPR003673.4E-118394IPR001471AP2/ERF domain
PRINTSPR003673.4E-11105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVANLRSRTE RKPSFLSSYC PVSREQENYM MVAALLRVVG GNPPELPQAG ACGMCGIGGC  60
LGCDSSVFAA DGDAGPPAPE NRYRGVRQRP WGKWAAEIRD PRRAVRKWLG TFDTAEAAAR  120
AYDAAAIEFR GPRAKLNFPI QEEQPLVTTQ PISLSSTIHL QEQQLGMQWE EDETDQHLGQ  180
ELMDLWAELQ DDGLSFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-2172139472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403097.11e-131PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLM0T3H91e-144M0T3H9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02310_0011e-145(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.12e-22ERF family protein