PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 370aa    MW: 41403.8 Da    PI: 9.7663
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.94.1e-066082123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C++C++ F r  nL+ H r+H
  GSMUA_Achr6P02490_001 60 YVCEICNQGFQRDQNLQMHRRRH 82
                           9*********************9 PP
2zf-C2H2157.2e-05138160123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            ++C  C+k +  +s++k H++t+
  GSMUA_Achr6P02490_001 138 WVCARCSKAYAVQSDYKAHLKTC 160
                            58*******************98 PP
3zf-C2H211.20.0011168186523
                            TTTEEESSHHHHHHHHHHT CS
                zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                            dCg++Fsr +++  H+ t+
  GSMUA_Achr6P02490_001 168 DCGRVFSRVESFIEHQDTC 186
                            9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.86E-55783No hitNo description
Gene3DG3DSA:3.30.160.601.4E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.976082IPR007087Zinc finger, C2H2
SMARTSM003550.00526082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355110102132IPR015880Zinc finger, C2H2-like
SMARTSM00355160138165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MLGPPSPAPS THLGGTTISS TFPQHSATNS KKKRRPAGTP DPDAEVVALS PRTLLESDRY  60
VCEICNQGFQ RDQNLQMHRR RHKVPWKLLK REAADQVRKR VFVCPEPTCL HHDPAHALGD  120
LVGIKKHFRR KHSSHRQWVC ARCSKAYAVQ SDYKAHLKTC GTRGHSCDCG RVFSRVESFI  180
EHQDTCTAGQ ARAQLQLTTQ PPACLSRTTS TTSRSSDTNF SPRLQLLPPP SRRHTPLSSS  240
ALLSTAIEEA KATKLQLSIA LAEEARQQAR RQLELAEHEY EKAKGMRQRA QQELDRVHAV  300
REQAVKQINS TLLQITCYAC KQQFQAKSAM ASEVNSLVVS YMSVMTEGEE DNDDHGDPRK  360
ISRSQLPSTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-16136188557Zinc finger protein JACKDAW
5b3h_F3e-16136188557Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13034KKKRR
23035KKKRRP
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8336801e-165CT833680.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA234B05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403147.10.0PREDICTED: protein indeterminate-domain 16-like
SwissprotF4IPE31e-138IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5
TrEMBLM0T3J70.0M0T3J7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-110indeterminate(ID)-domain 14
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kim JY,Ryu JY,Baek K,Park CM
    High temperature attenuates the gravitropism of inflorescence stems by inducing SHOOT GRAVITROPISM 5 alternative splicing in Arabidopsis.
    New Phytol., 2016. 209(1): p. 265-79
    [PMID:26256266]
  3. Ryu JY,Kim JY,Park CM
    Adaptive thermal control of stem gravitropism through alternative RNA splicing in Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1093715
    [PMID:26452406]
  4. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  5. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]