PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02580_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 354aa    MW: 39374 Da    PI: 8.1805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02580_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-1690135147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  GSMUA_Achr6P02580_001  90 RGHWRPAEDSKLKELVELYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 135
                            899*****************************.***********996 PP
2Myb_DNA-binding55.51.3e-17142185146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                            r ++T+eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  GSMUA_Achr6P02580_001 142 RRPFTEEEEEKLMTAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 185
                            679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.45385136IPR017930Myb domain
SuperFamilySSF466895.24E-2989183IPR009057Homeodomain-like
SMARTSM007171.9E-1489138IPR001005SANT/Myb domain
PfamPF002496.1E-1690135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2691143IPR009057Homeodomain-like
CDDcd001674.55E-1393134No hitNo description
PROSITE profilePS5129427.025137191IPR017930Myb domain
SMARTSM007174.8E-15141189IPR001005SANT/Myb domain
PfamPF002491.6E-14142184IPR001005SANT/Myb domain
CDDcd001677.12E-12144184No hitNo description
Gene3DG3DSA:1.10.10.601.6E-21144190IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MASRCYADSS PSSSAKGVPS QTDSLSFNTA SSVERHHCGC CTLPFMESCL SLQENAQQNS  60
EVSHDKYLLG ENTTVGSGAA ESGQSKSCAR GHWRPAEDSK LKELVELYGP QNWNLIAEKL  120
EGRSGKSCRL RWFNQLDPRI NRRPFTEEEE EKLMTAHRLY GNKWAMIARL FPGRTDNAVK  180
NHWHVIMARK YREQSFACRR RKLSQAVHRR FEEVAAARAT AARGFGSSHS SPSFPSRTPL  240
DSFSGTYALL TSSSTSSAPP LLSSLLFPAA YASFHAEPFM VFGQHSPLSL SMQQSTHLSH  300
VSANETPFEE NSESSHLDAA ASPTFIDFLG LEKLGAKRIE RPRCQHREED TIVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-34901907107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403156.10.0PREDICTED: transcriptional activator Myb-like
RefseqXP_018682503.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLM0T3K60.0M0T3K6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-74myb domain protein 105