PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P02700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ZF-HD
Protein Properties Length: 238aa    MW: 25661.6 Da    PI: 9.193
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P02700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.95.2e-333893357
            ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                           ++ Y+eClkNhAaslGgha+DGCgEfm s++++ +++++l+CaACgCHRnFHRr  
  GSMUA_Achr6P02700_001 38 EFLYRECLKNHAASLGGHALDGCGEFMLSPTADpADPTSLRCAACGCHRNFHRRLA 93
                           689******************************9*******************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.9E-273991IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-294191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257748.0E-224191IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.8034192IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.0E-16117182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-28120183IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-22124180IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDQATKVAEA EGKGKGFGFP NGALRKHHHR PPAPAEAEFL YRECLKNHAA SLGGHALDGC  60
GEFMLSPTAD PADPTSLRCA ACGCHRNFHR RLADPPSHRH RRGEDRRPAG LPGSPGTIPA  120
AQPRKRFRTK FSPEQKGRMQ ELSERLGWRM QKRDEGLVEE CCREIGVDKG VFKVWMHNNK  180
HTFLGLARRG DPASRSARSE GGIGGGDVSQ PEGSGHANGA DEGDGGHGHV VNGSLSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A3e-181241821775ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009381426.11e-101PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LXG04e-54ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLM0T3L81e-173M0T3L8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P02700_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-56homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]