PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P03200_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 213aa MW: 24700.7 Da PI: 7.0102

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P03200_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.5e-50	7	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 lppGf FhPtd elv++yLk+k++g+++++ +i+evdiyk+ePwdLp+ +v ++++ w+fF+ r++ky+ g+r+nrat++gyWk+t GSMUA_Achr6P03200_001 7 LPPGFGFHPTDVELVSHYLKRKTQGHNFDE--IIPEVDIYKHEPWDLPAkcHVPTRDNTWHFFTLRERKYRAGSRSNRATEEGYWKST 92 79***********************877..8***********5346667999************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 g+d++v+ +++++g+kktLv+++grap+g++tdW+mhey l GSMUA_Achr6P03200_001 93 GNDRNVKF-QNRVIGTKKTLVYHEGRAPRGKRTDWIMHEYDL 133 ***9.9999*************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-55	5	155	IPR003441	NAC domain
PROSITE profile	PS51005	54.201	7	155	IPR003441	NAC domain
Pfam	PF02365	1.8E-25	8	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
METLTALPPG FGFHPTDVEL VSHYLKRKTQ GHNFDEIIPE VDIYKHEPWD LPAKCHVPTR 60 DNTWHFFTLR ERKYRAGSRS NRATEEGYWK STGNDRNVKF QNRVIGTKKT LVYHEGRAPR 120 GKRTDWIMHE YDLDEKEFAS PGLKGTFVLC RVTKKNDWPL ENEKTEPVVC KESSSRSSDM 180 EDLDAWVAGL FDPNFGTNSN RLEHEAVVCP SLF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-46	7	158	15	172	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salt and cold stresses. {ECO:0000269\|PubMed:18813954}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403231.1	1e-156	PREDICTED: NAC domain-containing protein 74 isoform X1
Refseq	XP_009403232.1	1e-156	PREDICTED: NAC domain-containing protein 74 isoform X1
Refseq	XP_018683711.1	1e-156	PREDICTED: NAC domain-containing protein 74 isoform X1
Swissprot	Q7GCL7	2e-75	NAC74_ORYSJ; NAC domain-containing protein 74
TrEMBL	M0T3R8	1e-159	M0T3R8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P03200_001	1e-159	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7560	38	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	6e-65	NAC domain containing protein 57

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]