PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P03610_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 341aa    MW: 38375.8 Da    PI: 9.5694
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P03610_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087104127123
                            EEETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                            y C  Cg++F  +  L++H r  H
  GSMUA_Achr6P03610_001 104 YLCRVCGRRFFAHAKLVNHFRQiH 127
                            56*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.3104132IPR007087Zinc finger, C2H2
PROSITE patternPS000280106127IPR007087Zinc finger, C2H2
CDDcd061671.69E-11133257No hitNo description
PfamPF019366.2E-5176258IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10101.9E-4179257IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAFSPCRLLH LVRRHRTLAT AASSSRAVAV FWDLDNKPPN TIPPYDAAVR LHLAAASFGP  60
LRFSVAYANH HAFRHLPAPV RAARAERRAA DHLEAAKPSR VPSYLCRVCG RRFFAHAKLV  120
NHFRQIHERE QEKRLRRIDS VTGGRRVRLV AALSLKMEKY KKAARELLTP EVGYGLADEL  180
RRAGVVVRTV DDRPEAADRA LREHMVETMD RGKVGCLVLV SDDSGFLGVM REARMRCLKT  240
VVVGDEGDGA LKRYADSALS WKDVVSGKAK KEAASAVGRW KDRDLLKKLE WRHMPEEEEG  300
ESDIFDDDSD AGDEEDGCLG LVGERDKKPW WKLNSDSNDL H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403278.10.0PREDICTED: uncharacterized protein LOC103986875
RefseqXP_009403279.10.0PREDICTED: uncharacterized protein LOC103986875
RefseqXP_009403280.10.0PREDICTED: uncharacterized protein LOC103986875
RefseqXP_018683769.10.0PREDICTED: uncharacterized protein LOC103986875
RefseqXP_018683770.10.0PREDICTED: uncharacterized protein LOC103986875
RefseqXP_018683771.10.0PREDICTED: uncharacterized protein LOC103986875
TrEMBLM0T3V90.0M0T3V9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P03610_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122342023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-105C2H2 family protein