PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P05210_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 182aa    MW: 20268.9 Da    PI: 8.1212
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P05210_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20553153
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53
                           ++++GVr+++ +g+WvAeIr+p        +r++lg+f taeeAa+a+++a+  +
  GSMUA_Achr6P05210_001  5 KKFRGVRQRH-WGSWVAEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 53
                           59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-32565No hitNo description
SMARTSM003805.0E-40669IPR001471AP2/ERF domain
PfamPF008478.0E-13650IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-33664IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-21664IPR016177DNA-binding domain
PROSITE profilePS5103222.221663IPR001471AP2/ERF domain
PRINTSPR003671.0E-10718IPR001471AP2/ERF domain
PRINTSPR003671.0E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MVQSKKFRGV RQRHWGSWVA EIRHPLLKRR VWLGTFETAE EAARAYDEAA VLMSGRNAKT  60
NFPVHRASEG EDAAAAHSSS KALAEVLSAK LRKCCKTTPS PSLTCLRLDT EKSHIGVWQK  120
RAGTRADSSW VMTVELGSEA VGEMDDEERL ALQMIEELLS RNRPTSSSSH AGMEGEDHSF  180
FL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17371270ATERF1
3gcc_A2e-17371270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0929823e-42FP092982.1 Phyllostachys edulis cDNA clone: bphylf034m13, full insert sequence.
GenBankGQ3697893e-42GQ369789.1 Oryza sativa Indica Group cultivar N22 AP2 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405071.11e-117PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI334e-75WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLM0T4B91e-130M0T4B9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P05210_0011e-131(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37173876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.17e-64ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]