PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P06030_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 369aa    MW: 39952.8 Da    PI: 7.7597
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P06030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.31.8e-4290165277
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                            C v+gC+adls  +eyhrrhkvCevhsk+pvv+v g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+ 
  GSMUA_Achr6P06030_001  90 CSVDGCKADLSGSREYHRRHKVCEVHSKTPVVMVGGQEQRFCQQCSRFHQLVEFDEAKRSCRKRLDGHNRRRRKPP 165
                            **************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-3482151IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.29187164IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-4089169IPR004333Transcription factor, SBP-box
PfamPF031102.3E-3290163IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEWNAKISSW VFPEVEQVAD KNMEFLLGSS FVLGSQNSTG MDCSVDLKLG GLGDIRPAEK  60
SRSQPSMTTT AVGPSRRARA QGNAPQNASC SVDGCKADLS GSREYHRRHK VCEVHSKTPV  120
VMVGGQEQRF CQQCSRFHQL VEFDEAKRSC RKRLDGHNRR RRKPPPDSIN PGGLLPNHQG  180
SRFLMHPHLL PTPIQSHNWA GIIESEDMLH TNHSPLTFVD SKQHLSGSFS SNENRKQVPL  240
LQGDIAGFSI TTRLPFLMTI SSSTAESSSG NICALSLLSS ATKPGINADQ MLPADGVPMH  300
QSLVSSLPCH SSPQASTYVL PTGVSCSGVE DGQLIVRGAD ASLHCQSVFH AGGEGSSDWG  360
SQAPPFSWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-29901631184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146163KRSCRKRLDGHNRRRRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403551.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLM0T4K10.0M0T4K1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P06030_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.18e-46SBP family protein