PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P06220_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 239aa    MW: 27128.2 Da    PI: 9.9728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P06220_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.41.7e-15132222199
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k +++s+++   +l lp  f+++h  + +++ t+tl de+g + + ++    ++++  l++GWk+F   ++L  gD vvF+l++++
  GSMUA_Achr6P06220_001 132 FVKSMLQSHTTGGFWLGLPIIFCNKHL-P-KRGATITLIDENGDESDTTY--LAHKRG--LSGGWKGFSINHELVHGDAVVFQLIKTT 213
                            89*********************9995.3.3678****************..677766..9************************987 PP

                            EE..EEEEE-S CS
                     B3  89 efelvvkvfrk 99 
                            +f  +v ++r+
  GSMUA_Achr6P06220_001 214 TF--KVYIIRA 222
                            77..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-23125223IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-19126223IPR015300DNA-binding pseudobarrel domain
CDDcd100174.58E-23130221No hitNo description
PfamPF023621.3E-13132222IPR003340B3 DNA binding domain
SMARTSM010199.1E-19132223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.279132223IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGTTETMSYE EQRRRRLEEN KKKLEQLNLP HLSVALRDAA ASPKTSPAKQ IKRKMSRDAS  60
LTPVRRSVRV ASLPEPNYRE NLSLIYISIR IARVLKRRGL DDRVYASDEA REYAQTKAEE  120
IEAGLDPKFP SFVKSMLQSH TTGGFWLGLP IIFCNKHLPK RGATITLIDE NGDESDTTYL  180
AHKRGLSGGW KGFSINHELV HGDAVVFQLI KTTTFKVYII RASEYDSILF CLYGIIITI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297RVLKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403572.11e-150PREDICTED: B3 domain-containing protein Os06g0194400-like isoform X1
SwissprotQ69V366e-82Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM0T4M01e-177M0T4M0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P06220_0011e-178(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-58B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]