PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P06490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 289aa    MW: 33221.1 Da    PI: 11.1034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P06490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.6e-11891221448
                            HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  14 davkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            ++v+q+G + W+ Ia+++  gR +kqc++rw+++l
  GSMUA_Achr6P06490_001  89 NLVEQHGLRKWSHIAQMLH-GRIGKQCRERWHNHL 122
                            58*****************.*************97 PP
2Myb_DNA-binding58.81.2e-18128170145
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                            ++ W+ eEd++l++a+++ G++ W+ Ia++++ gRt++++k++w+
  GSMUA_Achr6P06490_001 128 KDTWSDEEDKILIQAHTEVGNK-WAEIAKRLP-GRTENSIKNHWN 170
                            679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.4769122IPR017930Myb domain
SMARTSM007172.6E-473124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-2189129IPR009057Homeodomain-like
CDDcd001674.86E-889122No hitNo description
PfamPF002492.6E-990122IPR001005SANT/Myb domain
SuperFamilySSF466895.14E-28102178IPR009057Homeodomain-like
PROSITE profilePS5129426.059123177IPR017930Myb domain
SMARTSM007173.0E-17127175IPR001005SANT/Myb domain
PfamPF002491.6E-16128170IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22130175IPR009057Homeodomain-like
CDDcd001678.48E-13130173No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVILSTSLNL EKGDVKVVIL SNKTIKERER ERERKEATPM SCPVWSTTSR PRWRSRRTRR  60
PCLREEVGVK DRRRPAWSKA NGLLKKTGNL VEQHGLRKWS HIAQMLHGRI GKQCRERWHN  120
HLRPNIKKDT WSDEEDKILI QAHTEVGNKW AEIAKRLPGR TENSIKNHWN ATKRRQFARR  180
RCRNRKNPKS GMLLQNYIKS LALSSAPSTR RRKASSGNSK AATAGAVEEL SAAADASPNS  240
DDNLVPACDF SDIICVDLKL ESGTRLYLSP YCRGTLRQKL DNCKVKTYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-379017718105MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-379017718105C-Myb DNA-Binding Domain
1msf_C4e-379017718105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405087.11e-115PREDICTED: transcription factor MYB98-like
SwissprotQ9S7L21e-60MYB98_ARATH; Transcription factor MYB98
TrEMBLM0T4P70.0M0T4P7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P06490_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-54myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]