PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P06510_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 253aa    MW: 28799.4 Da    PI: 10.1582
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P06510_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.8e-10126168251
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                            + +GV++  k+ +W A I++      +k+++lg+  + eeAa+++++a+ 
  GSMUA_Achr6P06510_001 126 KMTGVYF--KNMKWQAAIKVD-----KKQIHLGTVESQEEAARLYDRAAF 168
                            679**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.86118181IPR001471AP2/ERF domain
SMARTSM003803.0E-4126183IPR001471AP2/ERF domain
PfamPF008471.6E-4126169IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-8128171IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-6134172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MFIFSINLSS SFRARQSAMV SIRRRRYLGL CSGKSSFPVV VPQPIDNGNS VENPNQHVKP  60
VSVYPISSVN TSPQKLVNKS ETYSGSSNVS GLTTPKEALN HHCPGKEIKR SKRHRRKHYE  120
DQEPRKMTGV YFKNMKWQAA IKVDKKQIHL GTVESQEEAA RLYDRAAFMC GREPNFELTE  180
EEKQELKQYN WDDFLAMTRS AINNKKHQRK IGAGRRKKLE SQLPNNNRKQ EGGTPVSSIS  240
EDDEDVDVET SAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204218KKHQRKIGAGRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682752.11e-177PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X1
TrEMBLM0T4P90.0M0T4P9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P06510_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-36ERF family protein