PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P07120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 674aa    MW: 74158.3 Da    PI: 6.9409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P07120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.30.000324805171355
                            HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            R+ i +++ eLrel+P+ a      K s  + Lek+++++  Lq
  GSMUA_Achr6P07120_001 480 RQMIQDRIKELRELVPSgA------KCSIDALLEKTIKHMLFLQ 517
                            77899************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-7644IPR025610Transcription factor MYC/MYB N-terminal
PfamPF142151.3E-1762152IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.48467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-4480520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MGLPPREALR RLCLEFGWSY AVFWRAVGFG SRMHLIWDDR YYEEKLGMSS CQADDAIGVL  60
VDKIMASQVH VVGDGLIGQA ASMGKHQWIS KDSLDKFGSK PEVELFIIFT DELLALQTVV  120
VVPVLPFGVI QLGSTEMVLE NIAFVNHVKG LFLKLNCGLG SLPSDTTQKT LKEKRSIYSS  180
SGLVLGDKST NSCTNADNIL CVTDDGCSPE LVRSPAPQSI AESFSAVPWR LNKKMQPSAS  240
EVMSSKQMIK TAHPLGKIIV QGTQDVFSKP VIEYKPLHTL KNDTSLLSVD FASSNDLLCM  300
LDCDSKSCCS TGTLDDLLVH KSSTNSCNLG TNKPKLPSDS DACPVFDSLN DQISYSGLLF  360
LNDSDQLLDA VVSKINSGAK QVSDDSVSCK TSLTHIHIQV KPEPACSSFD KSSCSFVKDG  420
EYSQNTGLCK SQISPWVENY RNVKYDYVSD SNSKKVVQVG NLNRKRLRPG ESPRPRPKDR  480
QMIQDRIKEL RELVPSGAKC SIDALLEKTI KHMLFLQSIS KHADKLKVAG EPKISSEEGG  540
LLLKDNFEGG ATWAFEVGTQ PMVCPIIVED LNPPRQLLVE MLCEERGFFL EIADFIRGLG  600
LTILKGVMEA RKNKVWARFA VEANRNVTRM EIFLSLVQLL EPTAGSSMAL PSVSGNINIP  660
HAILHQTYVP ARVN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403680.10.0PREDICTED: transcription factor LHW-like
TrEMBLM0T4W10.0M0T4W1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P07120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.19e-56conserved peptide upstream open reading frame 7