PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P07260_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 199aa MW: 21998.5 Da PI: 10.3525

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P07260_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3.1e-17	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl GSMUA_Achr6P07260_001 36 KGAWTKEEDQKLISYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 83 79****************************99**********97 PP
2	Myb_DNA-binding	58.8	1.2e-18	89	133	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++ GSMUA_Achr6P07260_001 89 RGNFTEEEDELIIKLHGLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 133 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-25	27	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.649	31	83	IPR017930	Myb domain
SuperFamily	SSF46689	3.95E-30	35	130	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-14	35	85	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-16	36	83	IPR001005	SANT/Myb domain
CDD	cd00167	1.75E-11	38	83	No hit	No description
PROSITE profile	PS51294	29.043	84	138	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-28	87	138	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-17	88	136	IPR001005	SANT/Myb domain
Pfam	PF00249	8.9E-17	89	133	IPR001005	SANT/Myb domain
CDD	cd00167	5.71E-13	91	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MILKGWSQCA CRSHGSPTGC AGMGRSPCCE KAHTNKGAWT KEEDQKLISY IKAHGEGCWR 60 SLPKAAGLLR CGKSCRLRWI NYLRPDLKRG NFTEEEDELI IKLHGLLGNK WSLIAGRLPG 120 RTDNEIKNYW NTHIKRKLLS RGIDPQTHGP INGGATAAFA APHPSETAVP KAPFVCVAIW 180 VSRAAKLVAA TPPKTRRMY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-31	36	138	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403695.1	1e-107	PREDICTED: myb-related protein 308
Swissprot	P81393	3e-88	MYB08_ANTMA; Myb-related protein 308
TrEMBL	M0T4X5	1e-145	M0T4X5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P07260_001	1e-146	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	4e-90	myb domain protein 6

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]