PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P07770_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 184aa MW: 19202.9 Da PI: 8.4192

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P07770_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.1	6.8e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C++C+vlr++C++ Cvl+p++ +++q +++a+v+++FG++ ++ll+a+p+++r+++++sl++eA+ r+ +Pv Gavg++ ++ GSMUA_Achr6P07770_001 2 SCNGCRVLRKGCSRACVLRPCLrwidtAEAQGHATAFVARFFGRAAFMSLLSAVPDSQRPALFQSLLFEACGRTINPVGGAVGLLCTG 89 6*******************9999777889**************************************************** PP DUF260 84 qqqleqlkaelall 97 +++l+q++++++l GSMUA_Achr6P07770_001 90 NWHLCQAAVNAVLN 103 *****9988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.485	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.5E-25	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSCNGCRVLR KGCSRACVLR PCLRWIDTAE AQGHATAFVA RFFGRAAFMS LLSAVPDSQR 60 PALFQSLLFE ACGRTINPVG GAVGLLCTGN WHLCQAAVNA VLNGDALAPL PSHPTAGSFP 120 PTPVSEPKRR SAASPSSSSA FFPRDMDLWL FPRPAAGASE ETPANSEGSV ATASGAPTLL 180 NLFG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009405108.1	1e-130	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	8e-61	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	M0T526	1e-128	M0T526_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P07770_001	1e-129	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4084	36	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	2e-52	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]