PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P07790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 457aa    MW: 50287.5 Da    PI: 5.1932
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P07790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.55.1e-93594542373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetsekn...sseelaalkl.. 83 
                            ++lL++cA+av+s+d++laq++L+ l+++a pdgd++qRl++ f++AL ar ++++s ++  a+++++++  +   ++++++a  l  
  GSMUA_Achr6P07790_001  59 EQLLVNCANAVESNDATLAQQILWVLNNIAPPDGDSNQRLTSAFLRALIARASKTGScKMLTAVAARADA--DlalHVHRFSAIDLas 144
                            79***************************************************93321333344444444..2346667777777789 PP

                   GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLa 166
                            f +++P+++f++ +aN +I eaveg  ++Hi+D+  ++++Q p+L++ La+Rpegpp +R+T+ +  ++         ++ e+g+rL 
  GSMUA_Achr6P07790_001 145 FIDLTPWHRFGYTAANATIAEAVEGVPAIHIVDLTTTHCMQMPTLIDLLANRPEGPPLIRLTVPSLTTTAppppmLDMSYDELGSRLV 232
                            **************************************************************9998777788877788899******* PP

                   GRAS 167 kfAeelgvpfefnvl...vakrledleleeLrvkp....gEalaVnlvlqlhrll...........desvsleserdevLklvkslsP 236
                            +fA++ +v +ef+v+    ++++++l +e+Lrv++    +Ea++Vn+++ lh+++           + + ++ s r+ +L+++++l+P
  GSMUA_Achr6P07790_001 233 NFARSRNVAMEFRVIpsdPSDAFDSL-IEQLRVERlvseDEAVIVNCQMLLHYIPeetvgaiattmSVNSPTLSVRKMFLEALRGLEP 319
                            **************955433344444.888888888888****************8888888665533333333789*********** PP

                   GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                            ++v+vv+++ad ++++++ r+ +a++y +  +d++++ lpr se+r+++E+  ++++i nv+a+eg +r+er e +++W +r+++aGF
  GSMUA_Achr6P07790_001 320 TLVTVVDEDADFTESDLVGRLRSAFNYLWIPYDTVDTFLPRGSEQRRWYEAG-VRWKIGNVIAQEGLQRVERVEPKGRWAQRMRAAGF 406
                            ****************************************************.9********************************** PP

                   GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            +++ ++e++a ++k++l +++  g+ +++e+++lvl+Wk++ +v++ aW
  GSMUA_Achr6P07790_001 407 RSAGFTEEVAVEVKSMLDEHA-AGWGLKKEEEELVLTWKGHDVVFAAAW 454
                            *********************.999************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.45932436IPR005202Transcription factor GRAS
PfamPF035141.8E-9059454IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MTQFTRSAPA PPPLHPNGVG LCLGMDASKP SLSRSRPWPG LPVSSSKSLG SLNSVNYMEQ  60
LLVNCANAVE SNDATLAQQI LWVLNNIAPP DGDSNQRLTS AFLRALIARA SKTGSCKMLT  120
AVAARADADL ALHVHRFSAI DLASFIDLTP WHRFGYTAAN ATIAEAVEGV PAIHIVDLTT  180
THCMQMPTLI DLLANRPEGP PLIRLTVPSL TTTAPPPPML DMSYDELGSR LVNFARSRNV  240
AMEFRVIPSD PSDAFDSLIE QLRVERLVSE DEAVIVNCQM LLHYIPEETV GAIATTMSVN  300
SPTLSVRKMF LEALRGLEPT LVTVVDEDAD FTESDLVGRL RSAFNYLWIP YDTVDTFLPR  360
GSEQRRWYEA GVRWKIGNVI AQEGLQRVER VEPKGRWAQR MRAAGFRSAG FTEEVAVEVK  420
SMLDEHAAGW GLKKEEEELV LTWKGHDVVF AAAWVPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-525445683474Protein SHORT-ROOT
5b3h_B3e-525445629420Protein SHORT-ROOT
5b3h_E3e-525445629420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403757.10.0PREDICTED: scarecrow-like protein 32
SwissprotQ9SN221e-160SCL32_ARATH; Scarecrow-like protein 32
TrEMBLM0T5280.0M0T528_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P07790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-157GRAS family protein