PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P09370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 339aa    MW: 36982.6 Da    PI: 5.1296
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P09370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.3e-10244285955
                            HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++RR+ri +++  L++l+P+      +K++ +++LekA+ Y+k Lq
  GSMUA_Achr6P09370_001 244 AKNRRERISERLKILQDLVPNG-----TKVDLVTMLEKAISYVKFLQ 285
                            69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-13233296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.11235284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-12235293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.85E-12237289No hitNo description
SMARTSM003531.4E-11241290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-7245285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALEKDRIWE GSQACPLYGG EASIQRLNPP SLGCMMIGEG EGSDFHGSSW SSLLPFLSDP  60
KNSFSSTYTL EAVDALPQEA LSILDCNATT SEHWAYSNAS VLCFEKGGRM PRAGPPSLDH  120
DDDCAAWIDA MDQNCQLSDL DIKCPTADST LIHEQDCFAV ENWCAVVGTP EKDKRQCQDR  180
FGLIYPGAAA VDGLRESIGR ATVLQKRPYT DASDRPSPKK QCRGNTGTTK DKSSPSKDPQ  240
STAAKNRRER ISERLKILQD LVPNGTKVDL VTMLEKAISY VKFLQLQVKV LATDEFWPAQ  300
GVKAPDVGKV KEALDAILSS HRDGSSSSKN AIRTFESAC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405135.10.0PREDICTED: uncharacterized protein LOC103988313
TrEMBLM0T5I60.0M0T5I6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P09370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37800.11e-46RHD SIX-LIKE 1