PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P09620_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 200aa MW: 22406.2 Da PI: 8.7148

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P09620_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.4	1.2e-11	13	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W +eEd++ vd+++ +Gg +W++++r g R + +c++rw + GSMUA_Achr6P09620_001 13 RRAWIKEEDKKVVDCIRVHGGASWRSVPRGAGPLRRGQSCRLRWSNC 59 678***************************99********986 PP
2	Myb_DNA-binding	46.1	1.1e-14	67	111	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g + ++E++l+++++++lG++ W++Ia +++ gR++ ++k++w+++l GSMUA_Achr6P09620_001 67 GCFEEDEEDLIIKLHALLGNR-WSLIAGRLP-GRSDDEIKNYWNSHL 111 56889**************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-15	4	61	IPR009057	Homeodomain-like
PROSITE profile	PS50090	9.489	8	60	IPR017877	Myb-like domain
SuperFamily	SSF46689	3.91E-22	11	107	IPR009057	Homeodomain-like
SMART	SM00717	1.4E-5	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	3.7E-9	13	59	IPR001005	SANT/Myb domain
CDD	cd00167	5.02E-5	15	58	No hit	No description
PROSITE profile	PS51294	23.422	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-21	62	115	IPR009057	Homeodomain-like
SMART	SM00717	7.4E-13	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-13	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-10	71	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MRSPCCEKQG SNRRAWIKEE DKKVVDCIRV HGGASWRSVP RGAGPLRRGQ SCRLRWSNCL 60 RPDVGGGCFE EDEEDLIIKL HALLGNRWSL IAGRLPGRSD DEIKNYWNSH LRKKLRSMGV 120 DPDNHRVTQN VLLRRSQSSH SATLSSTNDA TNERNCNGGL PDLNLDLTIS LPSSLVEKRP 180 GSEDSTDPAR LENPTLLLFP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-23	16	115	10	108	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	116	LRKKLRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009403956.1	1e-137	PREDICTED: transcription repressor MYB4
Swissprot	P81393	3e-58	MYB08_ANTMA; Myb-related protein 308
TrEMBL	M0T5L1	1e-143	M0T5L1_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P09620_001	1e-143	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09460.1	7e-58	myb domain protein 6

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]