PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P09740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 230aa    MW: 25590.2 Da    PI: 7.9572
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P09740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09145192455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR+riN++++ L+ l+P +    +k +  a +L + ++Y++sLq
  GSMUA_Achr6P09740_001 145 SHSLAERVRRKRINERMHCLQGLVPCC----HKAMGTARMLDEIINYVQSLQ 192
                            8*************************9....788*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.91E-8139196No hitNo description
SuperFamilySSF474598.11E-17139208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.6E-16141202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.958141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-7145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-10147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDPSWELNSL LEELNGSVME IPGVDGNYLF HQAELCVPFP DHLSGSLSAI CQTPIAQPQA  60
VACRAGQSQG DRDRKDIEAP DSSNEHSPVT PPETRVTEVK MKRNKNVCSA KISGNEKRAR  120
GDSKKAEKPK EVIHVRARRG QATDSHSLAE RVRRKRINER MHCLQGLVPC CHKAMGTARM  180
LDEIINYVQS LQNQVEFLSM KLSAASSFYG YCFDMETIAT PQVMSACMKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405138.11e-168PREDICTED: transcription factor BEE 3
TrEMBLM0T5M31e-172M0T5M3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P09740_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15639615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73830.12e-44BR enhanced expression 3