PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P09870_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 340aa    MW: 37014.5 Da    PI: 8.3029
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P09870_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.16.2e-31182237156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k+r++W+peLH+ F++a+e+LGGs++AtPk+i+e+m+v+gLt+++vkSHLQkYRl+
  GSMUA_Achr6P09870_001 182 KARRCWSPELHRLFLHALERLGGSHVATPKQIREMMEVDGLTNDEVKSHLQKYRLH 237
                            68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.439179239IPR017930Myb domain
SuperFamilySSF466891.18E-17180240IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-27180240IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-26182237IPR006447Myb domain, plants
PfamPF002499.6E-8184235IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MVDHSGREQR CHDCIRALEE ERRKIEAFQR ELPLCLQLVT RAIECVREQM GDDESVNDAP  60
VLEEFIPLKP SLASTSSEGS GEAKKAAMVG RLETKPDWLR SVQLWDQQPD TVLKVEPPKK  120
PMAVSLKKTG GAFQPFEREK HATTPPAATA AASNFTTSRG GGDSSRGGEM EKKEEQSPVH  180
RKARRCWSPE LHRLFLHALE RLGGSHVATP KQIREMMEVD GLTNDEVKSH LQKYRLHTRR  240
PNPADQSSSS RPQFVLVGGL VVPPASPPGG NGACAPPNGI YAPVASRPSG LRSQQRPRSG  300
IRPSNSGGRC SEDVNSMGDD DSASPTTSAS SQTTTASPPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-13182235154Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that may play a role in response to nitrogen. May be involved in a time-dependent signaling for transcriptional regulation of nitrate-responsive genes. Binds specifically to the DNA sequence motif 5'-GAATC-3' or 5'-GAATATTC-3'. Represses the activity of its own promoter trough binding to these motifs.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by nitrate. {ECO:0000269|PubMed:23324170}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009403982.10.0PREDICTED: myb family transcription factor EFM
SwissprotQ6Z8691e-83NIGT1_ORYSJ; Transcription factor NIGT1
TrEMBLM0T5N60.0M0T5N6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P09870_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64703754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25550.11e-74G2-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sawaki N, et al.
    A nitrate-inducible GARP family gene encodes an auto-repressible transcriptional repressor in rice.
    Plant Cell Physiol., 2013. 54(4): p. 506-17
    [PMID:23324170]