PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P10440_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 261aa    MW: 28459.5 Da    PI: 4.6836
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P10440_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-1985133355
                    AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            ++GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+  l+g
  GSMUA_Achr6P10440_001  85 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEKAALAYDRAAFMLRG 133
                            8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-3183143No hitNo description
SuperFamilySSF541712.68E-2284142IPR016177DNA-binding domain
SMARTSM003802.7E-3784147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-3284142IPR001471AP2/ERF domain
PROSITE profilePS5103222.47184141IPR001471AP2/ERF domain
PRINTSPR003671.6E-108596IPR001471AP2/ERF domain
PfamPF008471.3E-1385133IPR001471AP2/ERF domain
PRINTSPR003671.6E-10107123IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MATAMDVYCG TPAFSSSDPL REALEPFING APASTFSSSS SSASPEPLCF PSFSSPFSSF  60
LHQNPIFPMK RSGSPPSPPK PNKLFRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEKA  120
ALAYDRAAFM LRGDAARLNF PELRRNGAHM GSPLHSSVDA KLQAICDTLS NPEKQESAPL  180
ISAATEEAGT NGEFGTSGLE DTKSDISSSL EEDESSSSGS SAVSAMQYLD FTEAPWDESD  240
SFVLRKYPSW EIDWDSVLSS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2083141160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404053.11e-115PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E49e-63RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLM0T5U30.0M0T5U3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P10440_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-55related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]