PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P10700_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 256aa    MW: 28160.4 Da    PI: 7.3641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P10700_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +++++G+g+W+++++  g+ R+ k+c++rw +yl
  GSMUA_Achr6P10700_001 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPSNTGLMRCSKSCRLRWTNYL 61
                           79********************************************97 PP
2Myb_DNA-binding51.22.8e-1667112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T +E++l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  GSMUA_Achr6P10700_001  67 RGNFTDQEEKLIIRLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                            89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.121961IPR017930Myb domain
SuperFamilySSF466892.79E-3011108IPR009057Homeodomain-like
SMARTSM007177.3E-141363IPR001005SANT/Myb domain
PfamPF002493.2E-161461IPR001005SANT/Myb domain
CDDcd001674.08E-121661No hitNo description
PROSITE profilePS5129424.78462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.0E-2465116IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002492.4E-1567112IPR001005SANT/Myb domain
CDDcd001671.70E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRPPCCDKN GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PSNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TDQEEKLIIR LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKVRKPE  120
TGSDCPKSSG QSSHRTASSV SCSFDSKPST YASNTENISR LLQGWTKGSP KPSVAPASSG  180
SGVAESASSQ GSVSTSNCIM SPEPLESVFG FNDSTAERSE AGAPFSLLES WLLDEHDGHW  240
QESFLDVAVL DTCELF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-27141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C1e-261211625128MYB TRANSFORMING PROTEIN
1mse_C9e-27141164105C-Myb DNA-Binding Domain
1msf_C9e-27141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405155.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV78e-92MYB60_VITVI; Transcription factor MYB60
TrEMBLM0T5W90.0M0T5W9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P10700_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.11e-86myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]