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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | GSMUA_Achr6P11780_001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family | GRAS | ||||||||
| Protein Properties | Length: 342aa MW: 38338 Da PI: 5.49 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 398.8 | 5.8e-122 | 2 | 342 | 31 | 374 |
GRAS 31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd 118
+s +gdp qRl ay++e+Laar+a+s+ +lykal+++e + +s++l+a+++++ev+P++kf++++aN I ea+ ee+vHiiDfd
GSMUA_Achr6P11780_001 2 VSIQGDPPQRLSAYMVEGLAARIASSGRGLYKALKCKEPP---TSDQLSAMQILFEVCPCFKFGYMAANYIIIEAFRDEEKVHIIDFD 86
799************************************9...89******************************************* PP
GRAS 119 isqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
++qG Q+++L+q+L++ p++pp+lRi +v++pes+ le +g+rL+k+Aeelgvpfef++ +a + d+++ +L+ + gEal+V
GSMUA_Achr6P11780_001 87 LNQGSQYINLIQTLSTWPHKPPHLRISAVDDPESVqrAVGGLEIIGRRLEKLAEELGVPFEFSA-IAVKSGDVTPGMLDRRLGEALVV 173
*********************************99878889***********************.688999***************** PP
GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
n+++qlh+++desvs+ ++rde+L++vk+l Pk+v+vveq++++n+++Fl rf+e +yysa+fdsl+a+lpr+s++r++vEr++l+r
GSMUA_Achr6P11780_001 174 NFAFQLHHMPDESVSTVNQRDELLRMVKGLGPKLVTVVEQDMNTNTAPFLPRFMEVYNYYSAVFDSLDATLPRDSSDRMNVERQCLAR 261
**************************************************************************************** PP
GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ivn+vacega+r+er e ++kWr+r+++aGF + p++++++ +++l + ++ y+++eesg+l++gW+d++Lv++SaWr
GSMUA_Achr6P11780_001 262 DIVNIVACEGADRIERYEVAGKWRARMTMAGFVSCPFGTNVNGLVRALSGSYCDR-YKIKEESGALYFGWEDKTLVVTSAWR 342
***********************************************99999955.*************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 60.863 | 1 | 323 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 2.0E-119 | 2 | 342 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 342 aa Download sequence Send to blast |
MVSIQGDPPQ RLSAYMVEGL AARIASSGRG LYKALKCKEP PTSDQLSAMQ ILFEVCPCFK 60 FGYMAANYII IEAFRDEEKV HIIDFDLNQG SQYINLIQTL STWPHKPPHL RISAVDDPES 120 VQRAVGGLEI IGRRLEKLAE ELGVPFEFSA IAVKSGDVTP GMLDRRLGEA LVVNFAFQLH 180 HMPDESVSTV NQRDELLRMV KGLGPKLVTV VEQDMNTNTA PFLPRFMEVY NYYSAVFDSL 240 DATLPRDSSD RMNVERQCLA RDIVNIVACE GADRIERYEV AGKWRARMTM AGFVSCPFGT 300 NVNGLVRALS GSYCDRYKIK EESGALYFGW EDKTLVVTSA WR |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5b3h_A | 2e-62 | 6 | 341 | 52 | 377 | Protein SCARECROW |
| 5b3h_D | 2e-62 | 6 | 341 | 52 | 377 | Protein SCARECROW |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
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| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009404194.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
| Refseq | XP_009404195.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
| Refseq | XP_009404196.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
| Refseq | XP_009404197.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
| Refseq | XP_018683608.1 | 0.0 | PREDICTED: scarecrow-like protein 1 | ||||
| Swissprot | Q9SDQ3 | 1e-174 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
| TrEMBL | M0T676 | 0.0 | M0T676_MUSAM; Uncharacterized protein | ||||
| STRING | GSMUA_Achr6P11780_001 | 0.0 | (Musa acuminata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP5175 | 38 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT1G21450.1 | 1e-177 | SCARECROW-like 1 | ||||
| Publications ? help Back to Top | |||
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