PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P12100_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family B3
Protein Properties Length: 137aa    MW: 15671 Da    PI: 6.242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P12100_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.94.4e-1448132796
                            .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                     B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                            + +++++++l lp k   ++g+k  ++k ++l d+s rsW v +    +   + +t+GW+eF+  n+L+ g  + F ++   +fe+++
  GSMUA_Achr6P12100_001  48 TLSSNTRCLLELPQKLPVNNGKK--RQKVIILLDPSHRSWPVMY--HESTWFIGFTSGWNEFATVNNLQRGSLCEFFVVA-GKFEPTF 130
                            6788999*********9888855..6789***************..78777799**********************9776.8999998 PP

                            EE CS
                     B3  95 kv 96 
                            +v
  GSMUA_Achr6P12100_001 131 QV 132
                            87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.77E-1641124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.1E-1541134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.44842136IPR003340B3 DNA binding domain
CDDcd100173.59E-1043132No hitNo description
SMARTSM010196.5E-445136IPR003340B3 DNA binding domain
PfamPF023624.3E-1247132IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MIVPDTVPVE DKEENAFCLR SQDLKAVKIE NMDLDNLSSA TLFCFSLTLS SNTRCLLELP  60
QKLPVNNGKK RQKVIILLDP SHRSWPVMYH ESTWFIGFTS GWNEFATVNN LQRGSLCEFF  120
VVAGKFEPTF QVQMSQH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009405175.21e-92PREDICTED: uncharacterized protein LOC103988360
TrEMBLM0T6A85e-98M0T6A8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P12100_0018e-99(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122722730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-06B3 family protein