PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P13040_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 284aa MW: 31162.8 Da PI: 6.7311

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P13040_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.8	7.3e-11	130	188	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK ++ eLe+kv++L++e ++L +l l+k l++e+ GSMUA_Achr6P13040_001 130 KRAKRILANRQSAARSKERKIHYTSELERKVETLQTEATSLSAQLTLLQKDGTGLTAEN 188 9***********************************************99877666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.7E-15	126	190	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.749	128	191	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.9E-10	130	184	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-11	130	180	No hit	No description
SuperFamily	SSF57959	1.2E-10	130	182	No hit	No description
CDD	cd14703	9.62E-22	131	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MNPRFGQIPF PTPRGGGGGG ASHHRRALSE TFVRLPDDLL FDSDPDFEIP DIDFSSLSDD 60 NFSGDNGAPI AAEPARAATS AAVAAAGTGR PVPGAHLRSL SGESAPPLSD FAKKTMPSEK 120 LAELALIDPK RAKRILANRQ SAARSKERKI HYTSELERKV ETLQTEATSL SAQLTLLQKD 180 GTGLTAENRE LKLRLQAMEQ QAKLREALSE TLREEVERLK KATRQLSSVN QYPDNILIQQ 240 SVQNYYTHHQ QLPHPSNQAQ HLRSSPAQDS SDDKSCLSDP MDFM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009404345.1	0.0	PREDICTED: transcription factor VIP1
Swissprot	O22873	6e-55	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	M0T6K2	0.0	M0T6K2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P13040_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1925	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06850.2	4e-51	basic leucine-zipper 52

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]