PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P13340_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 191aa    MW: 21117.8 Da    PI: 6.9502
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P13340_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.16e-154595155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           + y+GVr  ++ g+Wv+e+r+p++   + r++lg+f t+e+Aa+a++ a  +l+g
  GSMUA_Achr6P13340_001 45 PVYHGVR-ERNGGKWVSEVREPRK---KSRIWLGTFRTPEMAARAHDVAVIALRG 95
                           689***9.7779******999843...6************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-94595IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-1946105IPR016177DNA-binding domain
PROSITE profilePS5103221.16746103IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-3046105IPR001471AP2/ERF domain
SMARTSM003802.5E-2846109IPR001471AP2/ERF domain
PRINTSPR003678.1E-84758IPR001471AP2/ERF domain
CDDcd000186.57E-2647105No hitNo description
PRINTSPR003678.1E-86985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDFEDSSSSS YSCSSSSSGL STAWAPGQSP KRKAGRKKFR ETRHPVYHGV RERNGGKWVS  60
EVREPRKKSR IWLGTFRTPE MAARAHDVAV IALRGASASL NFPDSAWALP RAESAAAEDV  120
RRAAVEAAEM FGPGLPVTPP AVFVDEEALF NMPELLEDMA RGLLVTPPAM QKEFDWDRVA  180
DCHTDLRLWA D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13441031272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018683173.11e-116PREDICTED: dehydration-responsive element-binding protein 1F-like isoform X1
RefseqXP_018683174.11e-116PREDICTED: dehydration-responsive element-binding protein 1F-like isoform X2
SwissprotA2WZI47e-57DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z57e-57DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLM0T6N21e-136M0T6N2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P13340_0011e-137(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.16e-51C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]