PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P14240_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 280aa    MW: 30962.9 Da    PI: 7.1989
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P14240_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19106155255
                    AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            +++GVr+++ +g+++AeIrd +     r  r++lg+++taeeAak ++ a+ +l+g
  GSMUA_Achr6P14240_001 106 RFRGVRRRP-WGKYAAEIRDpW-----RrVRVWLGTYDTAEEAAKVYDSAAIRLRG 155
                            69*******.**********88.....55*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.69E-21106164IPR016177DNA-binding domain
PfamPF008476.2E-12106155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-28106163IPR001471AP2/ERF domain
PROSITE profilePS5103223.288106163IPR001471AP2/ERF domain
SMARTSM003803.4E-33106169IPR001471AP2/ERF domain
PRINTSPR003676.7E-10107118IPR001471AP2/ERF domain
CDDcd000183.27E-23114162No hitNo description
PRINTSPR003676.7E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEVTLLMVPT KRTEHVDVTP KTLPLLHPKH RHCDAARPRT VRIFCDDHDA TDSSGDEGDR  60
RRVRRYVQEI RFEARPQAAG KSKPARKRKT AALAATEAGS GDAERRFRGV RRRPWGKYAA  120
EIRDPWRRVR VWLGTYDTAE EAAKVYDSAA IRLRGPDATT NFSHPMAAAQ PPPQPPPKKC  180
PSNSNLTFIS GGMLTAGIIP GQLSGFLPFE EAMLHDNFLD FGAAEPSLFD DSAQIGFIAG  240
DLSQTFIGSD LDFGSSTWQA GDDYFQDIAD LFPIEPLAAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1999164773Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275161e-48KJ727516.1 Zea mays clone pUT5375 AP2-EREBP transcription factor (EREB96) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404464.11e-178PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLM0T6X20.0M0T6X2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P14240_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.15e-27cytokinin response factor 4