PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P14430_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family TCP
Protein Properties Length: 240aa    MW: 25921 Da    PI: 9.345
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P14430_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.58.6e-3355135280
                    TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaessss 80 
                            +g+kd hsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ i++l++ ++ +++++   a +s s
  GSMUA_Achr6P14430_001  55 TGQKDCHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLMKNAKAVIDQLAEVPAWTPTSTltAAITSTS 135
                            799************************************************************955544333222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3055139IPR005333Transcription factor, TCP
PROSITE profilePS5136929.69657115IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGEGQNHHGG LGFRQLAVHD RHQQRLAQPR SGFGKLRGAG GEILEEHGGS IVRSTGQKDC  60
HSKVCTAKGP RDRRVRLSAH TAIQFYDVQD RLGYDRPSKA VDWLMKNAKA VIDQLAEVPA  120
WTPTSTLTAA ITSTSRVPPP SNQSPVAEPD QRMAPWNVAE TSDGVGHGGF PFSVPPPQAV  180
PTHSVLCPSQ LFSQRGPLQS SNSPSVHSWA EPMAANAEIQ MHPGLHHSVS SSTFQHGFRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2162115154Putative transcription factor PCF6
5zkt_B2e-2162115154Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404497.11e-104PREDICTED: transcription factor PCF5-like
TrEMBLM0T6Z11e-177M0T6Z1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P14430_0011e-177(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.36e-43TCP family protein