PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr6P14750_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family DBB
Protein Properties Length: 302aa    MW: 32358.9 Da    PI: 6.3323
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr6P14750_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.96.6e-06447542
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            C+ +e  e+   C  ++  lC  C +  H        H++v+l
  GSMUA_Achr6P14750_001  4 QCNACEAAEAAVLCCADEAALCWACDERVHAAnkvagkHQRVSL 47
                           7******99*********************66789999998875 PP
2zf-B_box26.81.1e-0863102437
               zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                            +kC+ ++e    +fC +++ llC++C l++H        H
  GSMUA_Achr6P14750_001  63 PKCDICQEASGFFFCLEDRALLCRSCDLAIHTAnpyvsaH 102
                            89******99*********************555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.954147IPR000315B-box-type zinc finger
SMARTSM003361.0E-8447IPR000315B-box-type zinc finger
CDDcd000218.98E-41547No hitNo description
SMARTSM003368.0E-1660107IPR000315B-box-type zinc finger
PROSITE profilePS501198.97360107IPR000315B-box-type zinc finger
PfamPF006432.5E-662102IPR000315B-box-type zinc finger
CDDcd000214.85E-963107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MKIQCNACEA AEAAVLCCAD EAALCWACDE RVHAANKVAG KHQRVSLFSD GAVGSGSSTR  60
GVPKCDICQE ASGFFFCLED RALLCRSCDL AIHTANPYVS AHQRFLVTGV RVGLDPTEPV  120
APAASQQSHS AGRVVVSLSE HLPTGTHLVS STETNAVSSS QIANQNGGLL VSKAPLYGFS  180
MSETILDWPL DDFFGFPDFN QNFGFTEHSA SKADSGRHGS SQGSPTCRST DDDRNADECL  240
GQVPEFRTVP KIPPPPTASG LSWQRNRHYP ASNNTVFVPD ICSSYDPNSF DASAGSKRRR  300
RQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404529.10.0PREDICTED: B-box zinc finger protein 23
TrEMBLM0T7230.0M0T723_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr6P14750_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.16e-62light-regulated zinc finger protein 1