PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr6P15370_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

MYB

Protein Properties

Length: 209aa MW: 24147 Da PI: 8.3326

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr6P15370_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.9	3e-15	4	51	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++lv v++lG ++W+ a+ g++R++k+c++rw +yl GSMUA_Achr6P15370_001 4 KGPWTEQEDLQLVWFVRLLGERRWDFLAKVSGLNRSGKSCRLRWVNYL 51 79********************************************97 PP
2	Myb_DNA-binding	59.4	8.1e-19	57	102	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgr+T++E++l v++++++G++ W++Iar+++ gRt++++k++w++++ GSMUA_Achr6P15370_001 57 RGRMTPQEEDLVVELHAKWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 102 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.729	1	51	IPR017930	Myb domain
SuperFamily	SSF46689	1.98E-27	3	98	IPR009057	Homeodomain-like
SMART	SM00717	9.6E-13	3	53	IPR001005	SANT/Myb domain
Pfam	PF00249	6.0E-14	4	51	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-18	5	58	IPR009057	Homeodomain-like
CDD	cd00167	2.77E-8	6	51	No hit	No description
PROSITE profile	PS51294	27.249	52	106	IPR017930	Myb domain
SMART	SM00717	2.8E-17	56	104	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-16	57	101	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-24	59	105	IPR009057	Homeodomain-like
CDD	cd00167	4.78E-11	59	102	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MTRKGPWTEQ EDLQLVWFVR LLGERRWDFL AKVSGLNRSG KSCRLRWVNY LHPGLKRGRM 60 TPQEEDLVVE LHAKWGNRWS RIARRLPGRT DNEIKNYWRT HMRKKAQERR TCSSPSPSSS 120 SSSNGPPSEL RVEKHDGDSV AEGSAFTSGL ELTDDEVKGY TMDQIWNEIA ASESCNMECP 180 PTSSSIWEDK SESLWRLDED LRISNPPRV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1mse_C	7e-26	1	106	1	105	C-Myb DNA-Binding Domain
1msf_C	7e-26	1	106	1	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:16531467}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009404618.1	1e-152	PREDICTED: transcription factor MYB59-like isoform X2
Swissprot	Q4JL84	1e-74	MYB59_ARATH; Transcription factor MYB59
TrEMBL	M0T785	1e-151	M0T785_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr6P15370_001	1e-152	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP636	37	169

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59780.3	2e-74	myb domain protein 59

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nishida S,Kakei Y,Shimada Y,Fujiwara T Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana. Plant J., 2017. 91(4): p. 741-753 [PMID:28586097] Hickman R, et al. Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network. Plant Cell, 2017. 29(9): p. 2086-2105 [PMID:28827376]